PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00024659-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 226aa    MW: 25273.1 Da    PI: 5.2923
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00024659-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.81.2e-084252446
                      HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqk 46
                      W+tIa+ ++ gRt++++k++w++
  PSME_00024659-RA  4 WSTIAAQLP-GRTDNDIKNYWNT 25
                      *********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.347131IPR017930Myb domain
SuperFamilySSF466895.55E-7435IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.0E-11431IPR009057Homeodomain-like
CDDcd001676.32E-6427No hitNo description
PfamPF002493.4E-6425IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MDLWSTIAAQ LPGRTDNDIK NYWNTRLKKK VLLGNRKDCQ ARRLAVAKQE SNNEQSYAMS  60
EFITSASPNI YCSEQAKDMN IDMHVPYFNL GTEIISQMFE KNCGSTSITE SNSSSEPAPT  120
QSNHQQIQLD QEVFDHSSCL GELRRSPGEI RVDNPSNKNM AMISTSSPIQ AFNYINAAQV  180
QQSAVHHEYV SEAASHILYE TPSATPVLIR LADQREVAIL DQSTSL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5ABB67e-55D5ABB6_PICSI; Putative uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65790.16e-15myb domain protein 68